This page lists all the R package I maintain and have authored. To access the documentation please use the menu above.
Those packages listed below with a green CRAN badge are available from this repository, which is known by R by default. The sources are maintained in public Git repositories. Git is a revision control system that is used to keep track of changes made to the package R code and its documentation. Until very recently, the public repositories have been hosted at Bitbucket. I am currently migrating them to GitHub. The reason is that at GitHub it is nowadays extremely easy to set up automated code tests under different R versions and operating systems (Windows, Linux and OS X).
The badges displayed below in order from left to right inform of: worst result checks on the version available through CRAN (released version), similar tests for the main or master branch of the GitHub repository (work in progress) and number of open issues at each Git repository (bug reports and requests for enhancements). All badges are linked to pages with further information.
CRAN checks are run regularly and may fail after a package is accepted in CRAN as a result of changes to other packages or R itself. NOTEs can generally be ignored in-between package releases, while WARNings, and ERRORs I attempt correct as soon as I notice them.
Issues at a Git repository can be raised by the developer as a TO DO list or by any user to report problems or suggest enhancements. The urgency with which issues need to be dealt with varies and consequently that there are open issues pending of resolution is normal in practice. The ‘issues’ badge is linked to the issues page at each Git repository through which it is possible to create new issues. All the packages are open-source and released under GPL.
Extensions to ‘ggplot2’ (3 packages)
For help on the use of these packages, please first ask at Stackoverflow, using tag [ggpmisc], but first search Stackoverflow for avaialble Q&A using the tag. If this fails to solve the problem, or if you think you have found a bug or want to suggest an enhancement, please, raise and issue at the coresponding GitHub repository for each package.
‘ggpmisc’ (Miscellaneous extensions to ‘ggplot2’)
‘ggpp’ (Extensions to the grammar of graphics’)
‘gginnards’ (Explore the innards of ‘ggplot2’)
The R for Photobiology Suite (10 packages)
For help on the use of these packages, please first ask at Stackoverflow, using tag [r4photobiology], but first search Stackoverflow for avaialble Q&A using the tag. If this fails to solve the problem, or if you think you have found a bug or want to suggest an enhancement, please, raise and issue at the coresponding GitHub repository for each package.
‘photobiology’
‘photobiologyWavebands’
‘ggspectra’
‘photobiologyInOut’
‘photobiologyPlants’
‘photobiologyFilters’ (data only)
‘photobiologyLamps’ (data only)
‘photobiologyLEDs’ (data only)
‘photobiologySun’ (data only)
‘photobiologySensors’ (data only)
Data acquisition with Ocean Optics spectrometers (2 packages)
For help on the use of these packages, please raise and issue at the GitHub repository for each package.
‘rOmniDriver’ (low level interface)
‘ooacquire’ (high level interface)
Complement to book (1 package)
For help on the use of this package or the book itself, please raise and issue at the GitHub repository for the book or contact the author by e-mail.
‘learnrbook’ (Datasets and code examples from the book Learn R: As a Language, The R Series, CRC Press, New York, 2020)
Badges served by METACRAN, img shields, and CRAN checks which is part of ROpenSci.